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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

36 rows where Is_protein_coding_sequence = 1 and Sequence_length = "2055.0"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS067334 Vibrio cholerae 47.4939172749392 2055.0 observed 1 1
DD467718 Vibrio cholerae serotype 47.4939172749392 2055.0 predicted 1 1
FB903205 Trichodesmium erythraeum ims101 34.6958637469586 2055.0 observed 1 1
HB773264 Trichodesmium erythraeum ims101 34.6958637469586 2055.0 observed 1 0
HB802925 Trichodesmium erythraeum ims101 34.6958637469586 2055.0 observed 1 0
HB917631 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 1
HB924800 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 0
HB960690 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 0
HC975040 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 0
HC982209 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 0
HD018100 Novosphingobium aromaticivorans dsm 12444 66.9586374695864 2055.0 observed 1 0
HK306546 Hondaea fermentalgiana 62.287104622871 2055.0 predicted 1 1
HK306549 Hondaea fermentalgiana 62.1897810218978 2055.0 predicted 1 1
HV962016 Schizochytrium 62.287104622871 2055.0 observed 1 1
HW259676 Schizochytrium 62.287104622871 2055.0 observed 1 0
HW937195 Schizochytrium 62.287104622871 2055.0 observed 1 0
HZ797102 Schizochytrium 62.287104622871 2055.0 observed 1 0
JC445598 Schizochytrium 62.287104622871 2055.0 observed 1 0
LF449357 Odobenus rosmarus divergens 65.2554744525548 2055.0 predicted 1 1
LF484755 Odobenus rosmarus divergens 53.5279805352798 2055.0 predicted 1 1
LF520153 Odobenus rosmarus divergens 62.287104622871 2055.0 predicted 1 1
LF555551 Odobenus rosmarus divergens 53.6739659367397 2055.0 predicted 1 1
LF590949 Odobenus rosmarus divergens 52.3114355231144 2055.0 predicted 1 1
LP125674 Alteromonas macleodii 40.6812652068127 2055.0 observed 1 1
LP128489 Methylophaga aminisulfidivorans 41.8004866180049 2055.0 observed 1 1
LP720440 Sphaeroforma arctica 52.5060827250608 2055.0 observed 1 1
LY540298 Schizochytrium 62.287104622871 2055.0 observed 1 0
MA152808 Schizochytrium 62.287104622871 2055.0 observed 1 0
MB445864 Schizochytrium 62.287104622871 2055.0 observed 1 0
MI410302 Sphaeroforma arctica jp610 52.5060827250608 2055.0 predicted 1 1
MV662192 Methylophaga aminisulfidivorans mp 41.8004866180049 2055.0 predicted 1 1
MY233576 Odobenus rosmarus divergens 65.2068126520681 2055.0 predicted 1 1
MY246633 Odobenus rosmarus divergens 68.661800486618 2055.0 predicted 1 1
MY259690 Odobenus rosmarus divergens 68.661800486618 2055.0 predicted 1 1
MY272747 Odobenus rosmarus divergens 53.4793187347932 2055.0 predicted 1 1
MY285804 Odobenus rosmarus divergens 56.8369829683698 2055.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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