Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

204 rows where Is_protein_coding_sequence = 1 and Sequence_length = "714.0"

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Sequence_status 2

Is_annotated 2

  • 1 141
  • 0 63

Is_protein_coding_sequence 1

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AR549711 Acetabularia peniculus 36.6946778711485 714.0 predicted 1 1
BD142140 Thermotoga maritima 43.8375350140056 714.0 observed 1 0
BD142767 Thermotoga maritima 43.8375350140056 714.0 observed 1 0
BD354635 Aequorea coerulescens 38.7955182072829 714.0 observed 1 0
CQ897008 Aequorea victoria 38.9355742296919 714.0 observed 1 1
CS020139 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
CS160907 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
CS351571 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
CS469308 Pyrococcus horikoshii 46.358543417367 714.0 observed 1 1
CS476008 Aequorea victoria 39.4957983193277 714.0 observed 1 0
CS486229 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
DD450576 Aequorea victoria 38.7955182072829 714.0 observed 1 0
DD467649 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
DI172051 Rhizophora mucronata 49.5798319327731 714.0 predicted 1 1
DI356711 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 1
DI359534 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 0
DI359810 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 0
DI360086 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 0
DI360362 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 0
DJ418325 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
DL175315 Aequorea coerulescens 38.7955182072829 714.0 observed 1 0
DL257744 Aequorea victoria 39.4957983193277 714.0 observed 1 0
DM011684 Anguilla japonica 61.624649859944 714.0 observed 1 1
E04354 Vibrio harveyi 44.6778711484594 714.0 observed 1 1
FB332996 Geobacillus kaustophilus hta426 50.8403361344538 714.0 observed 1 1
FB791793 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 1
FB799937 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
FB812743 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
FB851410 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
FB868089 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
FB887179 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
FB983364 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
GM961043 Ruegeria sp. tm1040 59.5238095238095 714.0 observed 1 0
GM987503 Thermotoga maritima 43.8375350140056 714.0 observed 1 0
GN124344 Flavobacteria bacterium bbfl7 35.8543417366947 714.0 observed 1 0
GN124352 Moritella sp. pe36 44.3977591036415 714.0 observed 1 1
GN125124 Magnetococcus marinus mc-1 54.6218487394958 714.0 observed 1 1
HB661852 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB669996 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB682802 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB721469 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB738148 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB757238 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 0
HB878388 Photobacterium profundum 40.8963585434174 714.0 observed 1 1
HB879077 Photobacterium profundum 40.8963585434174 714.0 observed 1 0
HB926241 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 1
HB938247 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HB942980 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HB954351 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HB966949 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HC475568 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC475760 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC475952 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC476144 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC476336 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC476528 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC476720 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC482079 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC482271 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC491235 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC497911 Prochlorococcus marinus str. mit 9211 39.9159663865546 714.0 observed 1 1
HC497949 Trichodesmium erythraeum ims101 38.9355742296919 714.0 observed 1 1
HC497985 Synechococcus sp. wh 5701 68.6274509803922 714.0 observed 1 1
HC497999 Synechococcus sp. rs9916 60.7843137254902 714.0 observed 1 1
HC498061 Aeropyrum pernix 63.7254901960784 714.0 observed 1 1
HC498235 Prochlorococcus marinus 35.4341736694678 714.0 observed 1 1
HC498237 Prochlorococcus marinus 39.4957983193277 714.0 observed 1 1
HC521199 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC733617 Ostreococcus tauri 58.1232492997199 714.0 observed 1 0
HC899906 Methanocaldococcus jannaschii 30.1120448179272 714.0 observed 1 1
HC935797 Photobacterium profundum 40.8963585434174 714.0 observed 1 0
HC936486 Photobacterium profundum 40.8963585434174 714.0 observed 1 0
HC983650 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HC995656 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HD000390 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HD011761 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HD024359 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 0
HH764335 Geobacillus kaustophilus hta426 50.8403361344538 714.0 observed 1 0
HJ398465 Cyanothece sp. 55.7422969187675 714.0 predicted 1 1
HJ398467 Arthrospira platensis c1 43.9775910364146 714.0 predicted 1 1
HJ398618 Odobenus rosmarus divergens 52.8011204481793 714.0 predicted 1 1
HJ399152 Reinekea blandensis med297 55.7422969187675 714.0 predicted 1 1
HK084090 Magnetococcus marinus 54.6218487394958 714.0 predicted 1 1
HK167401 Anabaena sp. ybs01 44.8179271708683 714.0 predicted 1 1
HK446082 Shewanella amazonensis 55.8823529411765 714.0 predicted 1 1
HK475916 Maribacter stanieri 28.8515406162465 714.0 predicted 1 1
HL449473 Leeuwenhoekiella nanhaiensis 44.9579831932773 714.0 predicted 1 1
HL449474 Leeuwenhoekiella nanhaiensis 45.2380952380952 714.0 predicted 1 1
HL449475 Leeuwenhoekiella nanhaiensis 45.3781512605042 714.0 predicted 1 1
HL449476 Leeuwenhoekiella nanhaiensis 45.5182072829132 714.0 predicted 1 1
HL449477 Leeuwenhoekiella nanhaiensis 45.0980392156863 714.0 predicted 1 1
HL449478 Leeuwenhoekiella nanhaiensis 45.2380952380952 714.0 predicted 1 1
HL449479 Leeuwenhoekiella nanhaiensis 46.218487394958 714.0 predicted 1 1
HL449480 Leeuwenhoekiella nanhaiensis 45.0980392156863 714.0 predicted 1 1
HL649135 Physeter macrocephalus 61.2044817927171 714.0 predicted 1 1
HL650848 Trichechus manatus latirostris 65.546218487395 714.0 predicted 1 1
HL657899 Physeter macrocephalus 51.6806722689076 714.0 predicted 1 1
HL659612 Trichechus manatus latirostris 55.4621848739496 714.0 predicted 1 1
HL666663 Physeter macrocephalus 59.9439775910364 714.0 predicted 1 1
HL668376 Trichechus manatus latirostris 64.1456582633053 714.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );