Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

80 rows where Is_protein_coding_sequence = 1 and Sequence_length = "726.0"

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Sequence_status 2

Is_annotated 2

  • 1 54
  • 0 26

Is_protein_coding_sequence 1

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS079417 Acropora millepora 44.2148760330578 726.0 observed 1 0
DI188109 Thermococcus sp. gr4 38.5674931129477 726.0 predicted 1 1
DI188321 Thermococcus sp. gr7 50.4132231404959 726.0 predicted 1 1
DI189208 Thermococcus sp. gr4 52.2038567493113 726.0 predicted 1 1
DL484319 Fundulus heteroclitus 40.495867768595 726.0 observed 1 0
GN122940 Prochlorococcus marinus str. mit 9515 31.404958677686 726.0 observed 1 1
GN122976 Prochlorococcus marinus str. mit 9312 31.129476584022 726.0 observed 1 1
GN122984 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 1
GN123052 Gamma proteobacterium htcc2207 48.8980716253444 726.0 observed 1 0
GN124703 Prochlorococcus marinus subsp. marinus str. ccmp1375 37.0523415977961 726.0 observed 1 1
GN124705 Prochlorococcus marinus subsp. pastoris str. ccmp1986 29.0633608815427 726.0 observed 1 1
GN124707 Prochlorococcus marinus str. mit 9313 53.8567493112948 726.0 observed 1 1
GN124711 Prochlorococcus marinus str. as9601 30.4407713498623 726.0 observed 1 1
GN124715 Prochlorococcus marinus str. mit 9215 30.5785123966942 726.0 observed 1 1
GN124717 Prochlorococcus marinus str. mit 9211 39.2561983471074 726.0 observed 1 1
GN124729 Prochlorococcus marinus str. mit 9312 30.0275482093664 726.0 observed 1 1
GN124737 Synechococcus sp. cc9311 58.5399449035813 726.0 observed 1 1
GN124745 Synechococcus sp. rs9917 67.7685950413223 726.0 observed 1 1
HB874529 Vibrio parahaemolyticus 50.137741046832 726.0 observed 1 1
HB874551 Vibrio vulnificus 50.8264462809917 726.0 observed 1 1
HB874721 Photobacterium profundum 47.2451790633609 726.0 observed 1 1
HB877970 Oceanobacillus iheyensis 36.0881542699724 726.0 observed 1 1
HB878278 Shewanella oneidensis 54.5454545454545 726.0 observed 1 1
HB878394 Photobacterium profundum 43.801652892562 726.0 observed 1 1
HB878967 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HB879083 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HB907101 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 0
HC196100 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
HC196866 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
HC497921 Synechococcus elongatus pcc 6301 53.030303030303 726.0 observed 1 1
HC900038 Methanococcus maripaludis 33.7465564738292 726.0 observed 1 1
HC906451 Pyrococcus horikoshii ot3 42.9752066115703 726.0 observed 1 0
HC906687 Ruegeria sp. tm1040 60.8815426997245 726.0 observed 1 1
HC931938 Vibrio parahaemolyticus 50.137741046832 726.0 observed 1 0
HC931960 Vibrio vulnificus 50.8264462809917 726.0 observed 1 0
HC932130 Photobacterium profundum 47.2451790633609 726.0 observed 1 0
HC935379 Oceanobacillus iheyensis 36.0881542699724 726.0 observed 1 0
HC935687 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HC935803 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HC936376 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HC936492 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HC964510 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 0
HH829676 Pyrococcus furiosus 42.0110192837466 726.0 observed 1 1
HI183783 Branchiostoma lanceolatum 52.0661157024793 726.0 observed 1 0
HI665805 Photobacterium frigidiphilum 43.801652892562 726.0 predicted 1 1
HI693550 Anabaena sp. ybs01 43.801652892562 726.0 predicted 1 1
HK082967 Anabaena sp. ybs01 41.3223140495868 726.0 predicted 1 1
HK083008 Anabaena sp. ybs01 42.8374655647383 726.0 predicted 1 1
HK446063 Anabaena sp. ybs01 41.0468319559229 726.0 predicted 1 1
HK446077 Jannaschia sp. 62.8099173553719 726.0 predicted 1 1
HK446098 Anabaena sp. ybs01 41.8732782369146 726.0 predicted 1 1
HK446937 Pseudoalteromonas sp. sg44-5 40.9090909090909 726.0 predicted 1 1
HK446939 Nitrosococcus oceani c-27 45.1790633608815 726.0 predicted 1 1
HK668514 Aquifex aeolicus 45.1790633608815 726.0 predicted 1 1
HK687290 Anabaena sp. ybs01 36.9146005509642 726.0 predicted 1 1
HK989667 Lysobacter maris 66.1157024793388 726.0 predicted 1 1
HV535139 Neopyropia yezoensis 62.8099173553719 726.0 observed 1 1
HZ284308 Trichechus manatus latirostris 65.0137741046832 726.0 predicted 1 1
HZ292296 Trichechus manatus latirostris 55.0964187327824 726.0 predicted 1 1
HZ300284 Trichechus manatus latirostris 62.1212121212121 726.0 predicted 1 1
HZ308272 Trichechus manatus latirostris 53.5812672176309 726.0 predicted 1 1
HZ316260 Trichechus manatus latirostris 51.7906336088154 726.0 predicted 1 1
HZ531061 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 1
JC250816 Archaeoglobus fulgidus 43.801652892562 726.0 observed 1 1
LF465079 Odobenus rosmarus divergens 63.3608815426997 726.0 predicted 1 1
LF500477 Odobenus rosmarus divergens 50.9641873278237 726.0 predicted 1 1
LF535875 Odobenus rosmarus divergens 60.4683195592286 726.0 predicted 1 1
LF571273 Odobenus rosmarus divergens 53.9944903581267 726.0 predicted 1 1
LF606671 Odobenus rosmarus divergens 49.7245179063361 726.0 predicted 1 1
LG095056 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LG135299 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LG135348 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LP129408 Alcanivorax hongdengensis 53.9944903581267 726.0 observed 1 1
LQ215631 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LQ297302 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LQ708004 Aeromonas salmonicida 56.7493112947658 726.0 observed 1 0
LQ708024 Aeromonas salmonicida 56.7493112947658 726.0 observed 1 0
LZ221740 Oncorhynchus mykiss 57.9889807162534 726.0 observed 1 1
MQ067826 Aequorea victoria 61.1570247933884 726.0 observed 1 1
MS916828 Alcanivorax sp. k 65.8402203856749 726.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );