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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

17 rows where Sequence_status = "observed" and Species_name = "Acropora aspera"

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These facets timed out: Sequence_status, Is_annotated

Species_name 1

  • Acropora aspera · 17 ✖

Is_protein_coding_sequence 1

  • 1 17
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX699753 Acropora aspera 46.8181818181818 660.0 observed 1 0
AX699755 Acropora aspera 46.606334841629 663.0 observed 1 0
AX699819 Acropora aspera 46.5359477124183 765.0 observed 1 0
AX699821 Acropora aspera 46.5359477124183 765.0 observed 1 0
AX699823 Acropora aspera 47.1212121212121 660.0 observed 1 0
AX699825 Acropora aspera 47.2727272727273 660.0 observed 1 0
AX699827 Acropora aspera 46.7571644042232 663.0 observed 1 0
AX699829 Acropora aspera 46.7571644042232 663.0 observed 1 0
AX699921 Acropora aspera 46.9357249626308 669.0 observed 1 1
DD192281 Acropora aspera 46.8181818181818 660.0 observed 1 1
DD192282 Acropora aspera 46.606334841629 663.0 observed 1 1
DD192314 Acropora aspera 46.5359477124183 765.0 observed 1 0
DD192315 Acropora aspera 46.5359477124183 765.0 observed 1 0
DD192316 Acropora aspera 47.1212121212121 660.0 observed 1 1
DD192317 Acropora aspera 47.2727272727273 660.0 observed 1 1
DD192318 Acropora aspera 46.7571644042232 663.0 observed 1 1
DD192319 Acropora aspera 46.7571644042232 663.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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