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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Sequence_status = "observed" and Species_name = "Branchiostoma belcheri tsingtauense"

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Suggested facets: GC_content, Sequence_length

Is_protein_coding_sequence 2

  • 1 18
  • 0 10

Is_annotated 2

  • 0 22
  • 1 6

Species_name 1

  • Branchiostoma belcheri tsingtauense · 28 ✖

Sequence_status 1

  • observed · 28 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GM961382 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 1
GN110413 Branchiostoma belcheri tsingtauense 57.7639751552795 483.0 observed 1 1
GN111722 Branchiostoma belcheri tsingtauense 53.5353535353535 495.0 observed 1 1
HB437531 Branchiostoma belcheri tsingtauense 60.7456140350877 456.0 observed 1 1
HB462055 Branchiostoma belcheri tsingtauense 49.6124031007752 258.0 observed 1 1
HB867527 Branchiostoma belcheri tsingtauense 49.6124031007752 258.0 observed 1 0
HB868364 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HB870843 Branchiostoma belcheri tsingtauense 47.0042194092827 1185.0 observed 0 0
HB871621 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HB872539 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HB874177 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HB875010 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HB879482 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HB889327 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HB903092 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HC507543 Branchiostoma belcheri tsingtauense 57.7639751552795 483.0 observed 1 0
HC924936 Branchiostoma belcheri tsingtauense 49.6124031007752 258.0 observed 1 0
HC925773 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HC928252 Branchiostoma belcheri tsingtauense 47.0042194092827 1185.0 observed 0 0
HC929030 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HC929948 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HC931586 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HC932419 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HC936891 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HC946736 Branchiostoma belcheri tsingtauense 50.0 258.0 observed 1 0
HC960501 Branchiostoma belcheri tsingtauense 52.2208883553421 833.0 observed 0 0
HW671961 Branchiostoma belcheri tsingtauense 53.7688442211055 597.0 observed 1 1
LZ185620 Branchiostoma belcheri tsingtauense 53.7688442211055 597.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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