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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

8 rows where Sequence_status = "observed" and Species_name = "Chloroherpeton thalassium"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
JC250387 Chloroherpeton thalassium 55.2631578947368 38.0 observed 0 0
JC250388 Chloroherpeton thalassium 37.7551020408163 882.0 observed 1 1
JC250390 Chloroherpeton thalassium 36.1641896673744 1413.0 observed 1 1
JC250392 Chloroherpeton thalassium 34.2995169082126 414.0 observed 1 1
JC250394 Chloroherpeton thalassium 42.9012345679012 972.0 observed 1 1
JC250396 Chloroherpeton thalassium 33.6933045356371 1389.0 observed 1 1
JC250398 Chloroherpeton thalassium 38.9990557129367 1059.0 observed 1 1
JC250400 Chloroherpeton thalassium 43.4182590233546 1884.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 4962.81ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT