home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

20 rows where Sequence_status = "observed" and Species_name = "Conus magus"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Conus magus · 20 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD261395 Conus magus 53.3039647577093 227.0 observed 0 0
BD394984 Conus magus 51.4423076923077 208.0 observed 0 0
BD394985 Conus magus 52.8169014084507 142.0 observed 0 0
BD394986 Conus magus 52.112676056338 142.0 observed 0 0
BD394987 Conus magus 53.5211267605634 142.0 observed 0 0
DD012741 Conus magus 51.8867924528302 318.0 observed 0 0
DD012742 Conus magus 50.5791505791506 259.0 observed 1 0
DD012743 Conus magus 51.1811023622047 254.0 observed 0 0
DD101347 Conus magus 40.7222914072229 803.0 observed 0 0
DD101348 Conus magus 43.140243902439 656.0 observed 0 0
DD101349 Conus magus 41.5824915824916 594.0 observed 0 0
DD101350 Conus magus 39.5209580838323 501.0 observed 0 0
DD101351 Conus magus 40.7488986784141 454.0 observed 0 0
DJ379392 Conus magus 46.4150943396226 265.0 observed 1 0
DJ379399 Conus magus 47.2 250.0 observed 1 0
DJ379434 Conus magus 46.0207612456747 289.0 observed 1 0
DJ379435 Conus magus 44.3223443223443 273.0 observed 1 0
DJ379436 Conus magus 47.0588235294118 289.0 observed 1 0
DJ379437 Conus magus 45.7564575645756 271.0 observed 1 0
FB299888 Conus magus 53.3039647577093 227.0 observed 0 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 5042.889ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT