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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Sequence_status = "observed" and Species_name = "Uncultured marine bacterium 577"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 1

  • 0 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB899899 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB902902 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB914435 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB924118 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB940404 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB951412 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HB957412 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HC911396 Uncultured marine bacterium 577 40.2640264026403 303.0 observed 1 0
HC957308 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HC960311 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HC971844 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HC981527 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HC997813 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HD008822 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0
HD014822 Uncultured marine bacterium 577 39.6414342629482 1506.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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