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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Sequence_status = "observed" and Species_name = "Zobellia galactanivorans"

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These facets timed out: Is_annotated, Species_name

Is_protein_coding_sequence 2

  • 1 10
  • 0 3

Sequence_status 1

  • observed · 13 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX008608 Zobellia galactanivorans 39.6068796068796 2035.0 observed 0 0
AX008610 Zobellia galactanivorans 42.2222222222222 1440.0 observed 0 0
AX008612 Zobellia galactanivorans 43.3574879227053 828.0 observed 1 1
DI445134 Zobellia galactanivorans 47.2361809045226 1194.0 observed 1 0
HI998156 Zobellia galactanivorans 44.3574690150033 1533.0 observed 1 0
HI998159 Zobellia galactanivorans 39.4557823129252 882.0 observed 1 0
HW072855 Zobellia galactanivorans 44.3574690150033 1533.0 observed 1 1
HW072856 Zobellia galactanivorans 39.4557823129252 882.0 observed 1 1
HW238257 Zobellia galactanivorans 47.2361809045226 1194.0 observed 1 1
JC181114 Zobellia galactanivorans 48.6326681448633 1353.0 observed 1 1
JC243785 Zobellia galactanivorans 48.6326681448633 1353.0 observed 1 0
JC481466 Zobellia galactanivorans 48.2654600301659 1326.0 observed 1 1
JC481470 Zobellia galactanivorans 39.5061728395062 81.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 2340.4ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT