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Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

47 rows where Is_deep_sea = 1 and Phylum = "Pseudomonadota"

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Suggested facets: Taxonomic_source, Deep_sea_source

Phylum 1

  • Pseudomonadota · 47 ✖

Is_deep_sea 1

  • 1 · 47 ✖

Is_ABNJ_present 1

  • UNKNOWN 47

Domain 1

  • Bacteria 47
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Alcanivorax Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.049957-0 UNKNOWN
Alcanivorax pacificus Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Alteromonas mediterranea de Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0309-y UNKNOWN
Alteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s00203-022-02908-8 UNKNOWN
Aurantimonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1080/01490450902724840 UNKNOWN
Erythrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijsem.0.003136 UNKNOWN
Gammaproteobacteria Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Halomonas titanicae Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.020628-0 UNKNOWN
Hydrogenovibrio crunogenus Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/jb.187.16.5761-5766.2005 UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Idiomarina loihiensis l2tr Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Marinobacter salinexigens Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1099/ijsem.0.004236 UNKNOWN
Marinobacter santoriniensis nksg1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2545824694 UNKNOWN
Marinobacter sp. ac-23 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2855226351 UNKNOWN
Marinomonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Marinomonas profundimaris Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Mariprofundus ferrooxydans pv-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639857004 UNKNOWN
Moritella marina atcc 15381 Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/JB.01382-12 UNKNOWN
Nitratireductor indicus c115 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0025194 UNKNOWN
Photobacterium phosphoreum Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/genomeA.00096-14 UNKNOWN
Photobacterium profundum ss9 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Photobacterium sp. ska34 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Pseudoalteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1038/ismej.2010.103 UNKNOWN
Psychrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/MRA.00326-19 UNKNOWN
Psychrobacter sp. antimn-1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2718218092 UNKNOWN
Psychrobacter sp. kh172yl61 Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1128/mra.00326-19 UNKNOWN
Roseovarius Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Roseovarius sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Shewanella benthica kt99 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2501651207 UNKNOWN
Shewanella oneidensis Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mr-1 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra-f Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrabc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrb Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrd Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrdef Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtre Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrf Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrfcab Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis omca Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella sp. w3-18-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639633059 UNKNOWN
Shewanella violacea dss12 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=646564568 UNKNOWN
Sulfitobacter Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s12275-019-9150-3 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );
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