Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

104,467 rows

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Sequence_status 2

Is_protein_coding_sequence 2

  • 1 92,550
  • 0 11,917

Is_annotated 2

  • 1 71,148
  • 0 33,319
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
A01472 Physeter macrocephalus 51.8264840182648 438.0 predicted 1 1
A01473 Physeter macrocephalus 50.9677419354839 465.0 predicted 1 1
A01474 Trichechus manatus latirostris 55.4838709677419 465.0 predicted 1 1
A04570 Odobenus rosmarus divergens 53.8095238095238 210.0 predicted 1 1
A04571 Odobenus rosmarus divergens 53.8095238095238 210.0 predicted 1 1
A06457 Odobenus rosmarus divergens 50.2347417840376 213.0 predicted 1 1
A07924 Marinobacter vinifirmus 61.6666666666667 840.0 predicted 1 1
A10182 Viral hemorrhagic septicemia virus 50.0641025641026 1560.0 observed 1 0
A11249 Odobenus rosmarus divergens 53.8095238095238 210.0 predicted 1 1
A11250 Odobenus rosmarus divergens 53.8095238095238 210.0 predicted 1 1
A13590 Odobenus rosmarus divergens 52.0 150.0 predicted 1 1
A14656 Odobenus rosmarus divergens 58.4216725559482 849.0 predicted 1 1
A34791 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34792 Viral hemorrhagic septicemia virus 49.7803806734993 1366.0 observed 1 0
A34793 Viral hemorrhagic septicemia virus 50.3448275862069 1305.0 observed 1 0
A34794 Viral hemorrhagic septicemia virus 45.1754385964912 228.0 observed 1 0
A34795 Viral hemorrhagic septicemia virus 50.1089324618736 459.0 observed 0 0
A34796 Viral hemorrhagic septicemia virus 46.2882096069869 229.0 observed 0 0
A34797 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34798 Viral hemorrhagic septicemia virus 49.9176276771005 1821.0 observed 0 0
A42847 Psychrobacter maritimus 49.3612078977933 861.0 predicted 1 1
A43637 Odobenus rosmarus divergens 60.9934258582907 2738.0 predicted 1 1
A43647 Odobenus rosmarus divergens 51.1467054969057 2747.0 predicted 1 1
A43649 Odobenus rosmarus divergens 51.0838150289017 2768.0 predicted 1 1
A47120 Odobenus rosmarus divergens 42.2149122807018 912.0 predicted 1 1
A47122 Trichechus manatus latirostris 40.084388185654 1185.0 predicted 1 1
A49949 Psychrobacter maritimus 49.3612078977933 861.0 predicted 1 1
A52569 Physeter macrocephalus 55.4448398576512 1405.0 predicted 1 1
A52706 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52707 Odobenus rosmarus divergens 50.9677419354839 465.0 predicted 1 1
A52708 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52709 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52710 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52711 Odobenus rosmarus divergens 50.9677419354839 465.0 predicted 1 1
A52712 Odobenus rosmarus divergens 51.3978494623656 465.0 predicted 1 1
A52713 Odobenus rosmarus divergens 51.6129032258064 465.0 predicted 1 1
A52714 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52715 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52716 Odobenus rosmarus divergens 50.752688172043 465.0 predicted 1 1
A52717 Odobenus rosmarus divergens 51.3978494623656 465.0 predicted 1 1
A52718 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52719 Odobenus rosmarus divergens 50.9677419354839 465.0 predicted 1 1
A52720 Odobenus rosmarus divergens 51.1827956989247 465.0 predicted 1 1
A52721 Odobenus rosmarus divergens 51.6129032258064 465.0 predicted 1 1
A52722 Odobenus rosmarus divergens 51.3978494623656 465.0 predicted 1 1
A63601 Odobenus rosmarus divergens 45.3015427769986 713.0 predicted 1 1
A64392 Physeter macrocephalus 52.4305555555556 576.0 predicted 1 1
A75936 Odobenus rosmarus divergens 39.3202369816027 3207.0 predicted 1 1
A75941 Odobenus rosmarus divergens 42.3772609819121 387.0 predicted 1 1
A77048 Odobenus rosmarus divergens 53.5682023486902 1107.0 predicted 1 1
A78983 Physeter macrocephalus 37.8891419893698 1317.0 predicted 1 1
A78984 Physeter macrocephalus 39.0673575129534 965.0 predicted 1 1
A79049 Odobenus rosmarus divergens 57.7333333333333 1500.0 predicted 1 1
A81883 Actinia equina 42.9054054054054 888.0 observed 0 0
A81885 Actinia equina 47.4137931034483 696.0 observed 1 1
A83743 Thermococcus fumicolans 49.2716366752356 1167.0 predicted 1 1
A91096 Odobenus rosmarus divergens 52.7633851468048 1158.0 predicted 1 1
A91755 Odobenus rosmarus divergens 55.999180999181 4884.0 predicted 1 1
A92242 Physeter macrocephalus 53.2879818594104 441.0 predicted 1 1
A92244 Physeter macrocephalus 52.5305410122164 573.0 predicted 1 1
A92246 Physeter macrocephalus 52.093023255814 645.0 predicted 1 1
A94687 Odobenus rosmarus divergens 54.4494720965309 1326.0 predicted 1 1
A94688 Odobenus rosmarus divergens 56.4876957494407 1788.0 predicted 1 1
A95103 Methanosarcina mazei 49.2450638792102 861.0 predicted 1 1
A98087 Physeter macrocephalus 51.1945392491468 2344.0 predicted 1 1
A98523 Odobenus rosmarus divergens 59.8765432098765 162.0 predicted 1 1
AR213253 Trichechus manatus latirostris 55.5913978494624 930.0 predicted 1 1
AR213554 Trichechus manatus latirostris 44.6428571428571 840.0 predicted 1 1
AR214127 Odobenus rosmarus divergens 62.2770919067215 729.0 predicted 1 1
AR214521 Odobenus rosmarus divergens 44.2073170731707 984.0 predicted 1 1
AR215643 Odobenus rosmarus divergens 48.013816925734 579.0 predicted 1 1
AR216316 Odobenus rosmarus divergens 55.6473829201102 363.0 predicted 1 1
AR216960 Odobenus rosmarus divergens 68.5714285714286 245.0 predicted 1 1
AR217610 Odobenus rosmarus divergens 49.448123620309 453.0 predicted 1 1
AR217611 Odobenus rosmarus divergens 49.448123620309 453.0 predicted 1 1
AR217612 Odobenus rosmarus divergens 49.2273730684327 453.0 predicted 1 1
AR217613 Odobenus rosmarus divergens 49.0066225165563 453.0 predicted 1 1
AR219827 Trichechus manatus latirostris 54.4821583986075 1149.0 predicted 1 1
AR220086 Trichechus manatus latirostris 58.2403965303594 807.0 predicted 1 1
AR220260 Odobenus rosmarus divergens 53.353057199211 1014.0 predicted 1 1
AR220684 Odobenus rosmarus divergens 53.1024531024531 1386.0 predicted 1 1
AR220685 Odobenus rosmarus divergens 52.6112185686654 1551.0 predicted 1 1
AR220687 Odobenus rosmarus divergens 47.2988505747126 1740.0 predicted 1 1
AR221147 Odobenus rosmarus divergens 60.0081449806557 4911.0 predicted 1 1
AR222058 Thermococcus eurythermalis 56.3402889245586 1869.0 predicted 1 1
AR222659 Odobenus rosmarus divergens 50.9174311926606 218.0 predicted 1 1
AR223878 Odobenus rosmarus divergens 39.2516227567774 2619.0 predicted 1 1
AR224786 Physeter macrocephalus 48.1900452488688 442.0 predicted 1 1
AR225461 Trichechus manatus latirostris 40.2159244264507 741.0 predicted 1 1
AR226361 Odobenus rosmarus divergens 46.4646464646465 198.0 predicted 1 1
AR226364 Trichechus manatus latirostris 44.7619047619048 210.0 predicted 1 1
AR226516 Trichechus manatus latirostris 64.7058823529412 1190.0 predicted 1 1
AR226522 Odobenus rosmarus divergens 67.1428571428571 1190.0 predicted 1 1
AR227683 Odobenus rosmarus divergens 65.0224215246637 223.0 predicted 1 1
AR227954 Odobenus rosmarus divergens 50.7177033492823 627.0 predicted 1 1
AR227958 Odobenus rosmarus divergens 50.7177033492823 627.0 predicted 1 1
AR227959 Odobenus rosmarus divergens 49.2822966507177 627.0 predicted 1 1
AR229607 Hypnos monopterygius 39.1111111111111 1350.0 predicted 1 1
AR232450 Oceanobacter sp 60.9375 192.0 predicted 1 1
AR236278 Odobenus rosmarus divergens 53.822629969419 327.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );