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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

104,467 rows

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB691278 Novosphingobium aromaticivorans dsm 12444 68.4444444444444 1800.0 observed 1 0
HB691290 Ruegeria sp. tm1040 62.8571428571428 1785.0 observed 1 0
HB693268 Kandelia candel 57.4181117533719 519.0 observed 1 0
HB698458 Rhodopirellula baltica sh 1 54.006968641115 861.0 observed 1 0
HB698460 Prochlorococcus marinus subsp. pastoris str. ccmp1986 31.3661202185792 915.0 observed 1 0
HB698466 Vibrio vulnificus yj016 47.985347985348 819.0 observed 1 0
HB698516 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB698520 Colwellia psychrerythraea 34h 37.7572016460905 972.0 observed 1 0
HB698544 Novosphingobium aromaticivorans dsm 12444 66.4259927797834 831.0 observed 1 0
HB698552 Crocosphaera watsonii wh 8501 35.0225225225225 888.0 observed 1 0
HB698986 Avicennia marina 50.8451656524679 1479.0 observed 1 0
HB699166 Bruguiera gymnorhiza 39.8943196829591 2271.0 observed 1 0
HB700866 Ruegeria pomeroyi dss-3 67.1691792294807 1791.0 observed 1 0
HB700900 Novosphingobium aromaticivorans dsm 12444 68.4444444444444 1800.0 observed 1 0
HB700912 Ruegeria sp. tm1040 62.8571428571428 1785.0 observed 1 0
HB701978 Ostreococcus tauri 55.5555555555556 504.0 observed 1 0
HB702247 Prochlorococcus marinus subsp. marinus str. ccmp1375 40.6768837803321 1566.0 observed 1 0
HB702249 Prochlorococcus marinus subsp. pastoris str. ccmp1986 32.2097378277154 1602.0 observed 1 0
HB702251 Prochlorococcus marinus str. mit 9313 55.278310940499 1563.0 observed 1 0
HB702255 Synechococcus elongatus pcc 6301 56.039603960396 1515.0 observed 1 0
HB702257 Prochlorococcus marinus str. natl2a 36.6602687140115 1563.0 observed 1 0
HB702261 Synechococcus sp. cc9605 62.2992935131663 1557.0 observed 1 0
HB702263 Prochlorococcus marinus str. mit 9312 33.5922330097087 1545.0 observed 1 0
HB702265 Synechococcus elongatus pcc 7942 = fachb-805 56.1056105610561 1515.0 observed 1 0
HB702269 Crocosphaera watsonii wh 8501 40.1709401709402 1521.0 observed 1 0
HB702271 Trichodesmium erythraeum ims101 34.396497811132 1599.0 observed 1 0
HB702354 Bruguiera gymnorhiza 39.8943196829591 2271.0 observed 1 0
HB702592 Methanococcus maripaludis s2 38.9803921568627 1275.0 observed 1 0
HB702606 Prosthecochloris aestuarii dsm 271 51.8860662047729 1299.0 observed 1 0
HB702608 Trichodesmium erythraeum ims101 39.2424242424242 1320.0 observed 1 0
HB702610 Methanosarcina acetivorans 52.8627450980392 1275.0 observed 1 0
HB702612 Methanopyrus kandleri 63.1662688941925 1257.0 observed 1 0
HB702616 Pyrococcus abyssi 45.9905660377358 1272.0 observed 1 0
HB702618 Pyrococcus furiosus 45.1764705882353 1275.0 observed 1 0
HB702622 Methanosarcina acetivorans 50.6730007917656 1263.0 observed 1 0
HB702624 Methanocaldococcus jannaschii 38.3529411764706 1275.0 observed 1 0
HB702885 Bruguiera gymnorhiza 39.8943196829591 2271.0 observed 1 0
HB703544 Prosthecochloris aestuarii dsm 271 44.7971781305115 567.0 observed 1 0
HB704148 Rhodopirellula baltica sh 1 54.006968641115 861.0 observed 1 0
HB704150 Prochlorococcus marinus subsp. pastoris str. ccmp1986 31.3661202185792 915.0 observed 1 0
HB704156 Vibrio vulnificus yj016 47.985347985348 819.0 observed 1 0
HB704206 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB704210 Colwellia psychrerythraea 34h 37.7572016460905 972.0 observed 1 0
HB704234 Novosphingobium aromaticivorans dsm 12444 66.4259927797834 831.0 observed 1 0
HB704242 Crocosphaera watsonii wh 8501 35.0225225225225 888.0 observed 1 0
HB704399 Prochlorococcus marinus subsp. marinus str. ccmp1375 44.1666666666667 360.0 observed 1 0
HB704401 Prochlorococcus marinus subsp. pastoris str. ccmp1986 37.8917378917379 351.0 observed 1 0
HB704403 Prochlorococcus marinus str. mit 9313 47.7777777777778 360.0 observed 1 0
HB704411 Prochlorococcus marinus str. natl2a 42.4501424501425 351.0 observed 1 0
HB704413 Synechococcus sp. cc9605 60.1049868766404 381.0 observed 1 0
HB704415 Prochlorococcus marinus str. mit 9312 40.1709401709402 351.0 observed 1 0
HB704419 Crocosphaera watsonii wh 8501 44.0 375.0 observed 1 0
HB704421 Trichodesmium erythraeum ims101 38.8059701492537 402.0 observed 1 0
HB704425 Pediastrum duplex 63.3771929824561 456.0 observed 1 0
HB704427 Ulva pertusa 56.9047619047619 420.0 observed 1 0
HB704463 Synechococcus sp. 57.9365079365079 378.0 observed 1 0
HB704687 Bruguiera gymnorhiza 39.8943196829591 2271.0 observed 1 0
HB705426 Pyrococcus horikoshii ot3 44.6601941747573 618.0 observed 1 0
HB705432 Methanosarcina acetivorans c2a 48.7903225806452 744.0 observed 1 0
HB705440 Methanococcus maripaludis s2 37.8582202111614 663.0 observed 1 0
HB705484 Aeropyrum pernix 55.8252427184466 618.0 observed 1 0
HB705486 Archaeoglobus fulgidus 52.3569023569024 594.0 observed 1 0
HB705496 Methanosarcina acetivorans 48.377581120944 678.0 observed 1 0
HB705498 Methanocaldococcus jannaschii 35.2765321375187 669.0 observed 1 0
HB705500 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB705510 Pyrococcus abyssi 47.7832512315271 609.0 observed 1 0
HB705512 Pyrobaculum aerophilum 47.6874003189793 627.0 observed 1 0
HB705514 Pyrococcus furiosus 41.871921182266 609.0 observed 1 0
HB705516 Pyrococcus horikoshii 44.6633825944171 609.0 observed 1 0
HB705518 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB706468 Ruegeria pomeroyi dss-3 64.8587570621469 885.0 observed 1 0
HB706478 Colwellia psychrerythraea 34h 42.4920127795527 939.0 observed 1 0
HB706484 Prochlorococcus marinus str. natl2a 40.0191021967526 1047.0 observed 1 0
HB706502 Synechococcus sp. cc9605 62.534435261708 1089.0 observed 1 0
HB706504 Prochlorococcus marinus str. mit 9312 33.7220602526725 1029.0 observed 1 0
HB706506 Synechococcus elongatus pcc 7942 = fachb-805 59.0146750524109 954.0 observed 1 0
HB706528 Saccharophagus degradans 2-40 51.4254385964912 912.0 observed 1 0
HB706534 Crocosphaera watsonii wh 8501 42.5387596899225 1032.0 observed 1 0
HB706542 Ruegeria sp. tm1040 59.9114064230343 903.0 observed 1 0
HB706546 Trichodesmium erythraeum ims101 39.8255813953488 1032.0 observed 1 0
HB706550 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HB706552 Shewanella sp. ana-3 49.7249724972497 909.0 observed 1 0
HB706554 Shewanella sp. mr-7 49.5049504950495 909.0 observed 1 0
HB706558 Novosphingobium aromaticivorans dsm 12444 64.9305555555556 864.0 observed 1 0
HB706560 Croceibacter atlanticus htcc2559 37.5415282392027 903.0 observed 1 0
HB706562 Sulfitobacter sp. ee-36 62.8635346756152 894.0 observed 1 0
HB706564 Roseovarius nubinhibens ism 63.973063973064 891.0 observed 1 0
HB706568 Ostreococcus tauri 63.6205395996519 1149.0 observed 1 0
HB706612 Idiomarina loihiensis 49.9453551912568 915.0 observed 1 0
HB706622 Photobacterium profundum 44.5916114790287 906.0 observed 1 0
HB706624 Prochlorococcus marinus 39.8255813953488 1032.0 observed 1 0
HB706626 Prochlorococcus marinus 54.0 1050.0 observed 1 0
HB706628 Prochlorococcus marinus 33.2361516034985 1029.0 observed 1 0
HB706652 Shewanella oneidensis 50.8250825082508 909.0 observed 1 0
HB706658 Synechococcus elongatus 58.3087512291052 1017.0 observed 1 0
HB706660 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB706662 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB706668 Vibrio cholerae 49.8910675381264 918.0 observed 1 0
HB706670 Vibrio parahaemolyticus 49.4553376906318 918.0 observed 1 0
HB706672 Vibrio vulnificus 49.3464052287582 918.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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