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Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

98 rows where Domain = "Bacteria" and Is_deep_sea = 1

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Suggested facets: Taxonomic_source, is_ABNJ_present

Phylum 16

  • Pseudomonadota 47
  • Proteobacteria 19
  • Campylobacterota 6
  • Thermotogota 5
  • Bacteroidota 4
  • Bacillota 3
  • Actynomycetota 2
  • Aquificae 2
  • Firmicutes 2
  • Thermotogae 2
  • Actinobacteria 1
  • Bacteria incertae sedis 1
  • Calditrichaeota 1
  • Calditrichota 1
  • Rhodothermota 1
  • Thermodesulfobacteria 1

Is_ABNJ_present 3

  • UNKNOWN 87
  • YES 9
  • NO 2

Is_deep_sea 1

  • 1 · 98 ✖

Domain 1

  • Bacteria · 98 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Alcanivorax Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.049957-0 UNKNOWN
Alcanivorax pacificus Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Alteromonas macleodii Bacteria Proteobacteria WoRMS 1 2018 YES
Alteromonas mediterranea de Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0309-y UNKNOWN
Alteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s00203-022-02908-8 UNKNOWN
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Aquifex pyrophilus Bacteria Aquificae WoRMS 1 2018 UNKNOWN
Aurantimonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1080/01490450902724840 UNKNOWN
Caldithrix abyssi Bacteria Bacteria incertae sedis WoRMS 1 WoRDSS YES
Caldithrix abyssi dsm 13497 Bacteria Calditrichota NCBI 1 WoRDSS UNKNOWN
Calditrix abyssi Bacteria Calditrichaeota NCBI 1 https://doi.org/10.1099/ijs.0.02390-0 UNKNOWN
Caminibacter hydrogeniphilus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Caminibacter mediatlanticus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Caminibacter mediatlanticus tb-2 Bacteria Campylobacterota Wikipedia 1 2018 UNKNOWN
Erythrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijsem.0.003136 UNKNOWN
Gammaproteobacteria Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Geobacillus kaustophilus Bacteria Firmicutes WoRMS 1 2018 UNKNOWN
Geobacillus kaustophilus hta426 Bacteria Bacillota Wikipedia 1 2018 UNKNOWN
Halomonas titanicae Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.020628-0 UNKNOWN
Hydrogenovibrio crunogenus Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/jb.187.16.5761-5766.2005 UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Idiomarina loihiensis Bacteria Proteobacteria WoRMS 1 2018 YES
Idiomarina loihiensis l2tr Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Leeuwenhoekiella nanhaiensis Bacteria Bacteroidota Wikipedia 1 https://doi.org/10.1099/ijsem.0.000883 UNKNOWN
Maribacter hydrothermalis Bacteria Bacteroidota NCBI 1 https://doi.org/10.1007/s00284-021-02519-4 UNKNOWN
Marinactinospora thermotolerans Bacteria Actinobacteria WoRMS 1 WoRDSS UNKNOWN
Marinactinospora thermotolerans dsm 45154 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1099/ijs.0.005231-0 UNKNOWN
Marinobacter manganoxydans mni7-9 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Marinobacter salinexigens Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1099/ijsem.0.004236 UNKNOWN
Marinobacter santoriniensis nksg1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2545824694 UNKNOWN
Marinobacter sp. ac-23 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2855226351 UNKNOWN
Marinomonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Marinomonas profundimaris Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Mariprofundus ferrooxydans Bacteria Proteobacteria WoRMS 1 2018 YES
Mariprofundus ferrooxydans pv-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639857004 UNKNOWN
Microbulbifer agarilyticus Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Microbulbifer thermotolerans Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Moritella abyssi Bacteria Proteobacteria WoRMS 1 2018 YES
Moritella marina atcc 15381 Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/JB.01382-12 UNKNOWN
Moritella profunda Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Moritella sp. pe36 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Nitratifractor salsuginis Bacteria Proteobacteria WoRMS 1 WoRDSS NO
Nitratireductor indicus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Nitratireductor indicus c115 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0025194 UNKNOWN
Nitratiruptor sp. Bacteria Campylobacterota Wikipedia 1 https://doi.org/10.1099/ijs.0.63480-0 UNKNOWN
Nitratiruptor sp. sb155-2 Bacteria Campylobacterota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=640753037 UNKNOWN
Nitratiruptor tergarcus Bacteria Proteobacteria WoRMS 1 WoRDSS NO
Oceanobacillus iheyensis Bacteria Firmicutes WoRMS 1 2018 UNKNOWN
Oceanobacillus iheyensis hte831 Bacteria Bacillota Wikipedia 1 2018 UNKNOWN
Oceanobacillus piezotolerans Bacteria Bacillota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2840774770 UNKNOWN
Persephonella marina Bacteria Aquificae WoRMS 1 WoRDSS UNKNOWN
Photobacterium phosphoreum Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/genomeA.00096-14 UNKNOWN
Photobacterium profundum Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Photobacterium profundum ss9 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Photobacterium sp. ska34 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Polaribacter pacificus Bacteria Bacteroidota NCBI 1 https://doi.org/10.1099/ijsem.0.002082 UNKNOWN
Pseudoalteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1038/ismej.2010.103 UNKNOWN
Psychrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/MRA.00326-19 UNKNOWN
Psychrobacter sp. antimn-1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2718218092 UNKNOWN
Psychrobacter sp. kh172yl61 Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1128/mra.00326-19 UNKNOWN
Psychroflexus salarius Bacteria Bacteroidota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0143309 UNKNOWN
Rhodothermus profundi Bacteria Rhodothermota NCBI 1 https://doi.org/10.1099/ijs.0.012724-0 UNKNOWN
Roseovarius Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Roseovarius sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Salinispora sp. h7-4 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1128/MRA.00834-20 UNKNOWN
Shewanella benthica Bacteria Proteobacteria WoRMS 1 2018 YES
Shewanella benthica kt99 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2501651207 UNKNOWN
Shewanella oneidensis Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mr-1 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra-f Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrabc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrb Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrd Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrdef Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtre Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrf Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrfcab Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis omca Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella sp. w3-18-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639633059 UNKNOWN
Shewanella violacea dss12 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=646564568 UNKNOWN
Sulfitobacter Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s12275-019-9150-3 UNKNOWN
Sulfurimonas denitrificans Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Sulfurovum riftiae Bacteria Campylobacterota NCBI 1 https://doi.org/10.1099/ijsem.0.001106 UNKNOWN
Sulfurovum sp. Bacteria Campylobacterota NCBI 1 https://doi.org/10.1111/j.1462-2920.2010.02155.x UNKNOWN
Sulfurovum sp. nbc37-1 Bacteria Campylobacterota Wikipedia 1 2018 UNKNOWN
Thermodesulfatator indicus Bacteria Thermodesulfobacteria WoRMS 1 2018 UNKNOWN
Thermosipho melanesiensis Bacteria Thermotogae WoRMS 1 WoRDSS UNKNOWN
Thermosipho melanesiensis bi429 Bacteria Thermotogota Wikipedia 1 2018 UNKNOWN
Thermotoga maritima Bacteria Thermotogae WoRMS 1 2018 UNKNOWN
Thermotoga maritima msb8 Bacteria Thermotogota Wikipedia 1 2018 UNKNOWN
Thermotoga petrophila Bacteria Thermotogota Wikipedia 1 https://doi.org/10.1099/00207713-51-5-1901 UNKNOWN
Thermotoga sp. mc24 Bacteria Thermotogota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2517572021 UNKNOWN
Thermotoga sp. rq2 Bacteria Thermotogota Wikipedia 1 2018 UNKNOWN
Vibrio antiquarius Bacteria Proteobacteria NCBI 1 https://doi.org/10.1073/pnas.1503928112 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );
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